Benchmarking bulk and single-cell variant-calling approaches on Chromium scRNA-seq and scATAC-seq libraries

Table 2.

Area under precision recall curve (AUPRC) for bulk callers on pooled reads, in exonic regions for the case of scRNA-seq

Strelka HaplotypeCaller SAMtools FreeBayes
scRNA-seq 0.655 0.575 0.743 0.295
scATAC-seq 0.612 0.482 0.546 0.416

  • Bold indicates highest AUPRC among callers.

This Article

  1. Published in Advance August 15, 2024, doi: 10.1101/gr.277066.122 Genome Res. 34: 1196-1210

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