Benchmarking bulk and single-cell variant-calling approaches on Chromium scRNA-seq and scATAC-seq libraries

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Figure 3.
Figure 3.

Average over samples of cTPR (A,B) and common false-discovery rate (cFDR; C,D) versus alternate allele coverage for variants binned by total (e.g., pooled) alt-allele coverage (e.g., the point coverage = 400 would include variants from 400 to the next bin, which is 500), for each of the variant-calling approaches used, for both scRNA-seq (A,C) and scATAC-seq (B,D).

This Article

  1. Genome Res. 34: 1196-1210

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