Benchmarking bulk and single-cell variant-calling approaches on Chromium scRNA-seq and scATAC-seq libraries

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Figure 2.
Figure 2.

Precision-recall curves averaged over samples for different variant-calling approaches, for scRNA-seq (A) and scATAC-seq (B). Individual-cell calling (Strelka SC, HaplotypeCaller SC) shown with dashed line; dots signify the recommended quality filter level for each caller. QUAL > 30 for HaplotypeCaller, QUAL > 20 for others; no dot for single-cell callers that do not have a recommended filter level.

This Article

  1. Published in Advance August 15, 2024, doi: 10.1101/gr.277066.122 Genome Res. 34: 1196-1210

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