Benchmarking bulk and single-cell variant-calling approaches on Chromium scRNA-seq and scATAC-seq libraries

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Figure 1.
Figure 1.

Common true-positive rate (cTPR) averaged over samples for different variant-calling approaches, for scRNA-seq (A) and scATAC-seq (B), binned by VAF (e.g., the point VAF = 0.5 would include variants from 0.5 to the next bin, which is 0.6). The number of WGS variants with coverage in the single-cell sequencing modality, for scRNA-seq (C) and scATAC-seq (D), binned by VAF.

This Article

  1. Genome Res. 34: 1196-1210

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