Identifying genes within pathways in unannotated genomes with PaGeSearch

Table 3.

Features used for result filtering neural network model of PaGeSearch

Step Feature
Sequence similarity search Percent identity
Sequence similarity search Gene coverage
Gene prediction Percentage of transcript supported by hints
Protein alignment to predicted sequence Percent identity
Protein alignment to predicted sequence Percent similarity
Protein alignment to predicted sequence Gene coverage

This Article

  1. Genome Res. 34: 784-795

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