Plant genome evolution in the genus Eucalyptus is driven by structural rearrangements that promote sequence divergence

Table 1.

Summary of de novo genome assembly, quality assessment, and annotation of 35 Eucalypt genomes

Species Scaffolded genome size (Mbp) % of genome in scaffolds Scaffold N50 (Mbp) Contig N50 (Mbp) Contig count BUSCO complete LAI TE %
A. floribunda 388.21 99.73% 36.02 4.02 224 96.82% 14.5 34.55%
C. maculata 403.82 99.90% 40.55 4.69 173 97.25% 15.92 36.26%
E. albensa 606.89 99.79% 56.93 2.55 674 96.47% 17.3 46.57%
E. ANBG9806169 507.93 99.65% 49.61 2.40 476 96.86% 22.16 44.00%
E. brandiana 507.08 99.82% 45.47 7.28 168 98.11% 23.85 44.21%
E. caleyi 589.32 99.53% 59.52 4.77 276 96.47% 18.24 46.00%
E. camaldulensis 558.45 99.87% 52.65 2.48 418 96.73% 16.99 45.31%
E. cladocalyx 544.08 99.68% 51.92 2.80 390 97.59% 18.53 45.85%
E. cloeziana 480.07 99.75% 44.75 1.74 625 97.12% 19.06 42.57%
E. coolabah 606.31 99.53% 53.56 1.29 935 95.44% 15.9 45.89%
E. curtisii 435.26 99.96% 40.29 2.96 288 97.29% 18.34 41.66%
E. dawsonii 706.90 99.35% 67.73 0.99 1342 97.51% 17.01 45.88%
E. decipiens 590.95 99.50% 60.20 1.99 552 96.99% 18.87 46.95%
E. erythrocorys 539.20 99.99% 50.47 4.02 250 97.55% 20.18 47.07%
E. fibrosa 589.91 99.85% 55.66 6.45 192 96.73% 17.49 45.10%
E. globulus 545.02 99.28% 51.39 0.64 1747 96.69% 17.46 44.29%
E. grandis 615.89 99.44% 58.49 0.61 1747 96.09% 17.11 46.53%
E. guilfoylei 472.36 99.97% 44.61 4.25 209 98.02% 16.39 41.22%
E. lansdowneana 633.52 99.92% 59.67 2.35 489 97.12% 19.46 46.10%
E. leucophloia 568.48 99.38% 54.41 2.66 382 96.99% 17.91 44.37%
E. marginata 512.89 98.83% 50.56 1.01 989 96.17% 19.58 43.43%
E. melliodoraa 639.15 99.30% 60.83 1.87 564 98.67% 18.32 47.20%
E. melliodora × E. sideroxylon 603.57 99.80% 57.05 6.22 281 97.72% 17.96 46.71%
E. microcorys 440.91 99.92% 41.20 4.00 233 97.21% 16.2 41.39%
E. paniculata 588.85 99.66% 55.38 3.70 330 97.12% 18.58 44.92%
E. pauciflora 494.03 99.88% 50.46 6.58 209 97.25% 20.29 43.10%
E. polyanthemos 603.28 99.56% 57.46 4.66 300 96.82% 17.52 45.55%
E. pumila 529.75 99.70% 48.19 2.49 473 97.38% 17.74 44.17%
E. regnans 494.97 99.84% 47.06 5.26 205 97.25% 20.18 43.06%
E. shirleyi 597.18 99.88% 56.34 6.91 181 97.29% 19.89 45.85%
E. sideroxylona 592.133 99.87% 62.13 5.22 297 96.65% 18.68 46.57%
E. tenuipes 397.78 99.99% 35.74 3.43 207 96.39% 15.07 37.82%
E. victrix 557.16 99.85% 53.19 11.10 120 96.65% 18.71 44.34%
E. viminalis 558.71 99.11% 52.93 0.65 1755 96.47% 16.5 44.57%
E. virginea 532.79 99.97% 56.15 2.39 376 97.08% 17.69 43.78%

  • Alphabetically ordered list of genomes assembled and associated statistics.

  • aGenomes for E. albens, E. melliodora, and E. sideroxylon have been previously reported, being assembled using the same pipeline (Ferguson et al. 2023).

This Article

  1. Published in Advance April 8, 2024, doi: 10.1101/gr.277999.123 Genome Res. 34: 606-619

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