Phased nanopore assembly with Shasta and modular graph phasing with GFAse

Table 2.

Non-human Shasta phasing metrics, in terms of BUSCO gene completeness

Complete and single-copy (S) Complete and duplicated (D) Total diploid Total haploid Diploid N50
Both haps One hap Both haps One hap
Sepia bandensis 5.97% 95.39% 90.15% 0.73% 5,330,371,146 415,993,994 3,794,550
Noctua fimbriata 7.02% 93.29% 91.40% 4.82% 488,722,705 21,756,252 5,094,850
  • These results use the metazoan data set, which has 954 genes. Percentages are calculated as the proportion of the metazoan genes found, as a single copy or as duplicated (according to BUSCO output), in the haploid or diploid assemblies.

This Article

  1. Genome Res. 34: 454-468

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