Phased nanopore assembly with Shasta and modular graph phasing with GFAse

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Figure 5.
Figure 5.

The two types of Shasta output graphs, visualized as a 2D layout in Bandage (Wick et al. 2015) at two different scales. (A) A subregion of the “Assembly-Detailed.gfa,” showing near-variant scale nodes in a bubble chain and their phasing indicated by colors produced by Shasta. (B) A subregion of the “Assembly-Phased.gfa” showing a phased portion of Chr 11 from HG002, which terminates at two tangles, presumably caused by telomeric and centromeric sequences.

This Article

  1. Published in Advance April 16, 2024, doi: 10.1101/gr.278268.123 Genome Res. 34: 454-468

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