Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes

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Figure 1.
Figure 1.

Summary of the performances of the selected genome assemblers on PacBio HiFi reads for rice (haploid), potato (diploid), and wax apple (tetraploid). (A) Cumulative total size of contigs (left) and number of contigs (right) that have a size in the range encoded by the color in the legend (top: rice; middle: potato; bottom: wax apple); the vertical dashed line indicates the expected genome size. (B) BUSCO completeness scores (top: rice; middle: potato; bottom: wax apple). (C) Contig length distribution for various choices of the NGx fraction threshold. (D) Quality value scores. (E) Running time analysis. (F) Memory usage analysis (legend on panel D also applies to panels E,F).

This Article

  1. Genome Res. 34: 326-340

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