Table 1.
Breakdown of variants for SNPs, small insertions and deletions (<50 bp), and SV insertion and deletions (≥50 bp) for the total merged PanGenie+ variant set and the MAF-filtered variant set
| SNPs | Small insertion | Small deletion | SV insertion | SV deletion | |
|---|---|---|---|---|---|
| PanGenie+ | 23,278,277 | 2,954,293 | 2,502,528 | 28,087 | 21,033 |
| PanGenie + MAF ≥ 0.01 | 17,439,736 | 1,852,334 | 1,596,065 | 24,193 | 18,338 |
