Table 3.
Sequences of oligonucleotides used for biophysical studies
| RNA | Sequence (5′ to 3′) | No. of bases | No. of G/C runs | Score (Grinder/G4H)a |
|---|---|---|---|---|
| SNHG14 | GAGGCUUUGGGGUCUGGGCAGGG | 23 | 4 | 46/1.56 |
| LINC02780 | GGGAGGCUGAGGUGGG | 16 | 3 | 44/1.64 |
| SSU72-AS1 | GGGCGUGGUGGCGGG | 15 | 3 | 45/1.68 |
| SOX2-OT | GGGAGAGGGAAUGGGAGGGUAGAAGAAGGGGG | 32 | 5 | 54/1.84 |
| MIAT | GGGCCUGGGGAGGGGGCCUGGG | 22 | 4 | 61/2.08 |
| LINC00470 | GGUGGUGGAGGGAGCCCUGGGUCGAGUGG | 29 | 5 | 30/0.92 |
| CCDC26 | GGGUUCCUAGGUGAUAGGGUGUGG | 24 | 4 | 32/1.00 |
| LINC03125 | GGAGGCUCUUCUUUAGGGGAGAGAGGGAAAUGGG | 34 | 4 | 38/1.20 |
| MIR9-3HG (1) | GGGACUUGGCAGGGGACCUGGG | 22 | 3 | 45/1.44 |
| MIR9-3HG (2) | GGGGGAUGGGGAACAGGGCUGUGAAUGGG | 29 | 4 | 56/1.88 |
| ALS-FTD | GGGGCCGGGGCCGGGGCCGGGG | 22 | 4 | 67/2.36 |
| TERRA | AGGGUUAGGGUUAGGGUUAGGG | 22 | 4 | 50/1.64 |
| TRF2 | CGGGAGGGCGGGGAGGGC | 18 | 4 | 67/2.22 |
| TRF2 mut | CGUGAGUGCGCUGAGGGC | 18 | 1 | N/A/0.61 |
| F21T | FAM-GGGTTAGGGTTAGGGTTAGGG-TAMRA | 21 | 4 | 50/1.71 |
| CYP4F26P | CCCUCCCUCCCAGCCCCAUGAUUACCCC | 28 | 5 | −58/−2.04 |
| LY86-AS1 | CCCCAAACUGCCCCUGCUCCCCUCUCCCCC | 30 | 4 | −64/−2.28 |
| TMEM72-AS1 | CCCCACAGGCCCUCCCCUCCCC | 22 | 4 | −66/−2.44 |
| SLC12A5-AS1 | CCCCCAACCCCCUCCGCCCGCCCGCCCCC | 29 | 5 | −73/−2.72 |
| LNC-LBCS | CACCAUCCCCCCCACCCCCCCACCCCACCC | 30 | 5 | −66/−2.88 |
| GATA6-AS1 | CCCCGACCCCACCCCCUACCCCCCGCCC | 28 | 5 | −76/−2.96 |
| MYO3B-AS1 | CCCGCCCCGCCCCGCCCCCCACCCCC | 26 | 5 | −80/−3.16 |
| Tel21 | CCCTTACCCTTACCCTTACCC | 21 | 4 | −50/−1.71 |
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aPrediction tools: (Grinder) G4-iMGrinder, (G4H) G4 Hunter.
