Table 1.
Tools for novel allele variant inference from AIRR-seq data and their characteristics
| Numbers | Tool name | Year | Supported chain type(s) | Supported gene type(s) | Programming language(s) | Suitable for inference from hypermutated repertoires |
|---|---|---|---|---|---|---|
| 1 | MiXCR | 2023 | IGH, IGK, IGL, TRA, TRB | V, J | Java, Kotlin | Yes |
| 2 | TIgGER | 2015 | IGH, IGK, IGL | V | R | Yes |
| 3 | IgDiscover | 2016 | IGH, IGK, IGL, TRA, TRB | V, D, J | Python | No |
| 4 | Partis | 2019 | IGH, IGK, IGL | V | C, C++, Perl, Python | Yes |
| 5 | ImPre | 2016 | IGH, IGK, IGL, TRA, TRB | V, J | C, Perl | Yes |
