Table 2.
MCHelper average runtimes for the four species analyzed
| Species | RM2 | EDTA | REPET | |||
|---|---|---|---|---|---|---|
| Total runtime (h) | Extension step runtime (%) | Total runtime (h) | Extension step runtime (%) | Total runtime (h) | Extension step runtime (%) | |
| D. melanogaster | 1.42 ± 0.004 | 76.87 | 1.10 ± 0.025 | 62.02 | 3.46 ± 0.004 | 81.67 |
| O. sativa | 10.82 ± 0.050 | 83.64 | 10.71 ± 0.052 | 82.28 | 16.55 ± 0.084 | 79.76 |
| C. cornix | 5.98 ± 1.067 | 72.34 | 7,52 ± 0.033 | 63.48 | 12.33 ± 0.439 | 54.85 |
| D. rerio | 29.91 ± 0.094 | 95.91 | 41.95 ± 0.1056 | 72.92 | 27.92 ± 0.60 | 70.12 |
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MCHelper was executed 10 times for each raw library (RM2 EDTA and REPET) and the average and standard deviation (SD) were calculated. Total runtimes are given in hours.
