MCHelper automatically curates transposable element libraries across eukaryotic species

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Figure 6.
Figure 6.

Genomic proportions of TE orders annotated by the raw, MCHelper, and reference libraries. Note that the proportion of each genome labeled as “unclassified/unknown” TEs is not shown to ease the comparison of TE order proportions across libraries. Annotation with the EDTA library clearly overestimates the amount of TEs in Z. mays which could be due to an incomplete defragmentation of TE copies.

This Article

  1. Published in Advance December 9, 2024, doi: 10.1101/gr.278821.123 Genome Res. 34: 2256-2268

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