MCHelper automatically curates transposable element libraries across eukaryotic species

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Figure 1.
Figure 1.

MCHelper's tool workflow. Inputs, main steps, and default parameters of the MCHelper tool. MCHelper accepts as input a single FASTA file containing consensus sequences produced by a de novo TE identification tool or a folder containing files produced by the TEdenovo pipeline from REPET (see the MCHelper's GitHub for details). Colored boxes correspond to modules that can also be executed independently. Workflows of these modules are provided in Supplemental Figure S1.

This Article

  1. Published in Advance December 9, 2024, doi: 10.1101/gr.278821.123 Genome Res. 34: 2256-2268

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