Table 2.
SNV calling in nine-animal pedigree
| Individuals | Youngest budded 2018 | Middle budded 2012 | Oldest budded 2006 | Mother | |||||
|---|---|---|---|---|---|---|---|---|---|
| Age (years) | 0.08 | 0.08 | 7.20 | 7.30 | 8.10 | 11.10 | 12.00 | 12.30 | 12.60 |
| # Raw reads | 193.91 | 151.63 | 290.73 | 304.89 | 302.57 | 281.69 | 301.31 | 304.27 | 191.77 |
| # Mapped reads (million)a | 146.97 | 114.18 | 199.57 | 209.62 | 206.60 | 191.17 | 200.59 | 217.67 | 143.28 |
| % Mapped readsa | 80.08 | 79.76 | 72.02 | 71.98 | 71.65 | 70.96 | 69.52 | 74.63 | 79.03 |
| Mother versus buds (2006–2018) | |||||||||
| # Downsampled reads (million) | 141.19 | 141.18 | 141.18 | 141.19 | 141.17 | 141.18 | 141.18 | 141.18 | - |
| # Covered basesb | 442.90 | 444.13 | 440.64 | 436.60 | 446.12 | 444.74 | 442.49 | 444.50 | - |
| % Genome coveredb | 0.52 | 0.52 | 0.52 | 0.51 | 0.52 | 0.52 | 0.52 | 0.52 | - |
| # Combined variants | 98 | 113 | 86 | 89 | 111 | 107 | 96 | 109 | - |
| Individuals versus reference (≪1973 until last sexual reproduction) | |||||||||
| # Covered bases (million)b | 654.78 | 673.32 | 475.15 | 567.36 | 669.09 | 684.24 | 665.69 | 678.00 | 564.77 |
| % Genome coveredb | 76.69 | 78.86 | 55.65 | 66.45 | 78.37 | 80.14 | 77.97 | 79.41 | 66.15 |
| # Variants (million) | 4.60 | 4.69 | 3.38 | 3.98 | 4.67 | 5.21 | 4.64 | 4.71 | 4.75 |
| # Variants in CDS (million) | 0.18 | 0.18 | 0.14 | 0.16 | 0.18 | 0.18 | 0.18 | 0.18 | 0.16 |
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aUniquely mapping reads after removal of duplicates.
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b(Coverage ≥10).











