Table 1.
Sample size (n) and genetic diversity metrics among eight garden dormouse sampling regions with number of SNP-based polymorphic sites, observed (Hobs) and expected (Hexp) heterozygosity, allelic richness rarified by sample size (AR), the inbreeding coefficient FIS, and nucleotide diversity π estimated from 19,022 SNP loci, and observed autosomal heterozygosity (Hobs_A) estimated from ∼90,412 variant and ∼58,406,409 fixed sites
| Region | n | Polymorphic sites | Hobs | Hexp | FIS | π | Hobs_A |
|---|---|---|---|---|---|---|---|
| Alps | 9 | 5975 | 0.036 | 0.068 | 0.149 | 0.075 | 0.00028 |
| Central | 4 | 13,552 | 0.257 | 0.273 | 0.123 | 0.321 | 0.00017 |
| Harz Mountains | 12 | 12,992 | 0.223 | 0.233 | 0.053 | 0.245 | 0.00034 |
| Iberian Peninsula | 4 | 11,389 | 0.249 | 0.230 | 0.056 | 0.280 | 0.00067 |
| Northeast | 7 | 13,173 | 0.209 | 0.244 | 0.124 | 0.264 | 0.00036 |
| Northwest | 48 | 18,062 | 0.286 | 0.344 | 0.180 | 0.360 | 0.00042 |
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Values for the Northwest region were generated by running four separate analyses of n = 12 and then averaging the output to avoid biases resulting from the uneven sample size between the Northwest (n = 48) and the other regions.
