Comparison of the location of 16 human Chr X and Chr Y pseudoautosomal region (PAR) genes with the corresponding mouse and rat genes
| Gene | Hsa RefSeq | Hsa position | Mmu RefSeq | Mmu position | Rn Seq | Rn position |
|---|---|---|---|---|---|---|
| PLCXD1 | NM_018390 | Chr X: 109,617–131,584 Chr Y: 108,952–130,733 |
NM_207279.3 | Chr 5: 110,247,661–110,253,819 | XM_006249594.4 | Chr 12: 52,238,611–52,241,876 |
| GTPBP6 | NM_012227 | Chr X: 132,978–149,874 Chr Y: 132,127–148,960 |
NM_145147.5 | Chr 5: 110,251,843–110,256,063 | NM_001135840.1 | Chr 12: 52,234,612–52,238,574 |
| PPP2R3B | NM_013239 | Chr X: 165,039–218,172 Chr Y: 168,543–224,805 |
Absent | NM_001139492.1 | Chr 14: 103,483–110,740 | |
| SHOX | NM_001191546 | Chr X: 471,065–484,646 Chr Y: 484,200–497,713 |
NM_001302357.1 | Chr 3: 66,879,056–66,889,104 | Absent | |
| CRLF2 | NM_022148 | Chr X: 1,035,704–1,058,464 Chr Y: 1,050,450–1,072,677 |
NM_001310694.1 | Chr 5: 109,702,575–109,706,859 | NM_134465.2 | Chr 14: 118,930–123,637 |
| CSF2RA | NM_001161531 | Chr X: 1,116,112–1,155,181 Chr Y: 1,129,402–1,169,666 |
NM_009970.2 | Chr 19: 61,212,840–61,216,856 | NM_001037660.1 | Chr 14: 113,073–118,247 |
| IL3RA | NM_002183 | Chr X: 1,187,106–1,226,335 Chr Y: 1,201,550–1,246,463 |
NM_008369.2 | Chr 14: 8,114,270–8,123,357 | NM_139260.3 | Chr 12: 21,431,846–21,437,547 |
| SLC25A6 | NM_214418 | Chr X: 1,229,803–1,235,689 Chr Y: 1,250,365–1,255,930 |
Absent | XM_039097301.1 | Chr 18: 70,846,358–70,847,597 | |
| ASMTL | NM_004192 | Chr X: 1,246,707–1,294,817 Chr Y: 1,266,964–1,315,887 |
Absent | NM_001105915.2 | Chr 12: 21,429,098–21,431,849 | |
| P2RY8 | NM_178129 | Chr X: 1,304,499–1,338,509 Chr Y: 1,325,953–1,401,516 |
Absent | Absent | ||
| AKAP17A | NM_005088 | Chr X: 1,393,022–1,403,887 Chr Y: 1,455,997–1,466,652 |
NM_001418372.1 | Chr X: 169,098,201–169,105,547 | NM_001127246.2 | Chr 12: 21,424,191–21,428,933 |
| ASMT | NM_001171038 | Chr X: 1,416,353–1,441,907 Chr Y: 1,478,823–1,502,882 |
NM_001308488.2 | Chr X: 169,106,356–169,111,844 | NM_144759.2 | Chr 12: 21,418,488,–21,423,338 |
| DHRSX | NM_145177 | Chr X: 1,829,953–2,113,734 Chr Y: 1,894,168–2,177,723 |
NM_001033326 | Chr 4: 156,390,377–156,410,432 | NM_001105914.1 | Chr 12: 21,413,533–21,418,321 |
| ZBED1 | NM_004729 | Chr X: 2,099,191–2,113,734 Chr Y: 2,163,179–2,177,723 |
Absent | Absent | ||
| CD99 | NM_002414 | Chr X: 2,304,268–2,354,297 Chr Y: 1,050,450–1,072,677 |
NM_138309.3 | Chr X: 70,463,666–70,536,455 | NM_001100804.1 | Chr 20: 56,000,484–56,005,135 |
| XG | NM_001141919 | Chr X: 2,365,041–2,429,263 Chr Y: absent |
Absent | Absent |
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The genes identified are all assigned to the human (Hsa) PAR, and most are present in both the X and Y Hsa PAR. In the mouse (Mmu), six of these genes are absent from the genome assembly (GRCm39), seven are on autosomes, and three are located on Chr X. In the GRCr8 assembly, four genes are absent from the assembly, whereas 12 are located on autosomes. Human data are from T2T assembly CHM 13v2.0. Mouse data are from GRCm39. Rat data are from BN-HiFi using annotation transfer from mRatBN7.2 (Liftoff).
