Table 4.
Structural and sequence annotations arising from comparison of GRCr8 and mRatBN7.2 assemblies using SyRI software
| Variation_type | Count | Length of GRCr8 (bp) | Length of mRatBN7.2 (bp) |
|---|---|---|---|
| Structural annotations | |||
| Syntenic regions | 115 | 2,643,106,557 | 2,615,590,561 |
| Inversions | 27 | 3,442,466 | 2,884,883 |
| Translocations | 79 | 3,577,812 | 3,580,878 |
| Duplications (GRCr8) | 79 | 1,581,927 | |
| Duplications (mRatBN7.2) | 21 | 155,272 | |
| Not aligned (GRCr8) | 295 | 160,909,795 | |
| Not aligned (mRatBN7.2) | 171 | 11,946,199 | |
| Sequence annotations | |||
| SNPs | 175,070 | 175,070 | 175,070 |
| Insertions | 196,324 | 1,527,995 | |
| Deletions | 87,274 | 4,603,406 | |
| Copy gains | 6 | 92,600 | |
| Copy losses | 8 | 957,763 | |
| Highly diverged | 1,981 | 45,639,987 | 21,500,783 |
| Tandem repeats | 4 | 12,524 | 12,857 |
