Detecting m6A RNA modification from nanopore sequencing using a semisupervised learning framework

Table 1.

Reported performance of m6A modification identification achieved by existing works

Method AUC-ROC
Read-levela Site-levela Yeast KOb Humanc
EpiNano (2019) (Liu et al. 2019) 0.90 0.680
ELIGOS (2021) (Jenjaroenpun et al. 2021) 0.756 0.287 (F1)
Nanocompore (2021) (Leger et al. 2021) 0.18 (F1)
Nanom6A (2021) (Gao et al. 2021) 0.97 0.71
CHEUI (2022) (Acera Mateos et al. 2024) 0.806 0.92
m6Anet (2022) (Hendra et al. 2022) 0.90 0.94 0.83
Xron (this work) 0.93 >0.99 0.90 0.91
  • Bold values: P < 0.001 (***). aThese results were reported on the IVT data set (Liu et al. 2019), in which single-read m6A modifications were known.

  • bYeast ime4Δ knockout data set from Liu et al. (2019).

  • cHuman HEK293T cell data set from Chen et al. 2021.

This Article

  1. Genome Res. 34: 1987-1999

Preprint Server