Characterizing tandem repeat complexities across long-read sequencing platforms with TREAT and otter

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

Figure 1.
Figure 1.

Schematic workflow of TREAT and otter. (A) TREAT workflow, highlighting the required inputs, the main features, and the main outputs of the tool. The red box highlights the main genotyping engine based on otter. (B) The main algorithmic steps of otter, a novel targeted local assembler for long-read sequencing data.

This Article

  1. Published in Advance October 15, 2024, doi: 10.1101/gr.279351.124 Genome Res. 34: 1942-1953

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research