Table 3.
Time and memory consumption of the hifiasm and RAFT-hifiasm methods
| Data set | hifiasm time/memory (h/GB) | RAFT-hifiasm workflow time/memory (h/GB) | |||
|---|---|---|---|---|---|
| Assembly | Error-correction | Overlap computation | RAFT | Assembly | |
| D1: HiFi (36×) | 7.3/125.9 | 7.3/125.9 | 2.3/92.5 | 4.5/115.4 | 3.1/108.2 |
| D2: Duplex (32×) | 5.8/107.1 | 5.8/107.1 | 2.2/75.7 | 4.8/107.5 | 4.7/107.5 |
| D3: D1 + D2 | 18.2/274.6 | 18.2/274.6 | 6.3/217.4 | 4.8/291.6 | 9.5/240.7 |
| D4: Ultra-long (40×) | 12.3/221.6 | 12.3/221.6 | 3.7/150.7 | 1.5/133.1 | 5.3/138.7 |
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The RAFT-hifiasm workflow involves computing the error-corrected reads, all-versus-all overlaps, fragmentation of reads, and assembly.
