Understanding isoform expression by pairing long-read sequencing with single-cell and spatial transcriptomics

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

Figure 1.
Figure 1.

Multiple RNA variables contribute to the production of distinct isoforms from the same gene. In alternative exon inclusion, an exon can be either included or spliced out of a transcript. In alternative TSS usage, transcription can start at two different positions. In alternative poly(A) site usage, the 3′ untranslated region can vary in length. In alternative donor or acceptor site usage, the boundary between an exon and an intron can shift. In intron retention, an intron can be included in the mature mRNA.

This Article

  1. Genome Res. 34: 1735-1746

Preprint Server