Table 1.
Summary statistics of the de novo genome assemblies of Staurotypus triporcatus and Apalone spinifera
| Species (diploid number) | Staurotypus triporcatus (2n = 54) | Apalone spinifera (2n = 66) | ||||
|---|---|---|---|---|---|---|
| Parameter | Mbp | Number of scaffolds | L (#Chrom.pairs) | Mbp | Number of scaffolds | L (#Chrom.pairs) |
| Total assembly | 1756.72 | 29,514 | – | 1904.74 | 6700 | – |
| N50 and L50 | 111.86 | 5 | – | 125.90 | 5 | – |
| N count | 122.37 | – | – | 22.03 | – | – |
| Gaps | 0.17 | – | – | 0.22 | – | – |
| Average scaffold size | 0.06 | – | – | 0.28 | – | – |
| Largest scaffold size | 296.41 | – | – | 317.79 | – | – |
| N90 and L90 | 48.63 | 13 | – | 23.12 | 21 | – |
| N and L when #scaffolds = #chromosome pairs | 1717.02 | 27 largest | L98 | 1892.59 | 33 largest | L99 |
| BUSCO Lineage set→ | Eukaryota | Vertebrata | Tetrapoda | Eukaryota | Vertebrata | Tetrapoda |
| Number of BUSCO genes | 303 | 2586 | 3950 | 303 | 2586 | 3950 |
| Number of complete genes (%) | 274 (90.4%) | 2479 (95.9%) | 3718 (94.2%) | 253.9 (83.8%) | 2286 (88.4%) | 3381.2 (85.6%) |
| Number of singleton genes (%) | 270 (89.1%) | 2467 (95.4%) | 3692 (93.5%) | 250.9 (82.8%) | 2273.1 (87.9%) | 3365.4 (85.2%) |
| Number of duplicated genes (%) | 4 (1.3%) | 12 (0.5%) | 26 (0.7%) | 3.03 (1%) | 12.9 (0.5%) | 15.8 (0.4%) |
| Number of fragmented genes (%) | 10 (3.3%) | 63 (2.4%) | 126 (3.2%) | 16.1 (5.3%) | 178.4 (6.9%) | 308.1 (7.8%) |
| Number of missing genes (%) | 19 (6.3%) | 44 (1.7%) | 106 (2.6%) | 33.03 (10.9%) | 121.5 (4.7%) | 260.7 (6.6%) |
-
(#Chrom.pairs) number of chromosome pairs.
