AGAP duplicons associate with structural diversity at Chromosome 10q11.22

Table 1.

AGAP genes annotated in the human genome (Ensembl release 110)

Gene symbol Ensembl ID Genomic location (hg38) Size Karyotype band Gene type 1:1 ortholog in mouse 1:1 ortholog in mouse lemur Orthologs in Catarrhini Primates
AGAP1 ENSG00000157985 Chr 2: 235,494,043–236,131,793 637,973 2q37.2 Protein-coding Yes Yes Yes
AGAP2 ENSG00000135439 Chr 12: 57,723,761–57,742,157 18,398 12q14.1 Protein-coding Yes Yes Yes
AGAP3 ENSG00000133612 Chr 7: 151,085,831–151,144,436 58,574 7q36.1 Protein-coding Yes Yes Yes
AGAP4 ENSG00000188234 Chr 10: 45,825,594–45,853,875 28,277 10q11.22 Protein-coding No No Yes
AGAP5 ENSG00000172650 Chr 10: 73,674,287–73,698,109 23,822 10q22.2 Protein-coding No No Yes
AGAP6 ENSG00000204149 Chr 10: 49,982,190–50,011,654 29,470 10q11.23 Protein-coding No No Yes
AGAP7P ENSG00000264204 Chr 10: 46,109,621–46,131,358 21,738 10q11.22 Pseudogene No No NA
AGAP9 ENSG00000204172 Chr 10: 47,501,854–47,523,638 21,786 10q11.22 Protein-coding No No Yes
AGAP10P ENSG00000230869 Chr 10: 45,678,692–45,700,532 21,838 10q11.22 Pseudogene No No NA
AGAP11 ENSG00000261011 Chr 10: 87,001,636–87,009,905 8,272 10q23.2 Noncoding RNA No No NA
AGAP12P ENSG00000265018 Chr 10: 48,009,873–48,031,640 21,763 10q11.22 Pseudogene No No NA
AGAP13P ENSG00000243289 Chr 10: 46,816,516–46,837,947 21,416 10q11.22 Pseudogene No No NA
AGAP14P ENSG00000279058 Chr 10: 46,337,224–46,358,714 21,497 10q11.22 Pseudogene No No NA

This Article

  1. Genome Res. 34: 1487-1499

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