Genealogical inference and more flexible sequence clustering using iterative-PopPUNK

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Figure 5.
Figure 5.

The comparison of pathogenic clonal groups (PCGs), outbreak-level phylogenomic clusters, and iterative-PopPUNK cluster in Vibrio parahaemolyticus. (A) The comparison of PCGs described in Yang et al. (2022) and iterative-PopPUNK clusters. (B,C) The comparison of outbreak-level phylogenomic clusters of two major PCGs and iterative-PopPUNK clusters.

This Article

  1. Published in Advance May 30, 2023, doi: 10.1101/gr.277395.122 Genome Res. 33: 988-998

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