Characterizing the targets of transcription regulators by aggregating ChIP-seq and perturbation expression data sets

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Figure 3.
Figure 3.

Overlap of ChIP-seq peaks with annotated regulatory elements. (A, left) The proportion of peaks for each human ChIP-seq experiment, grouped by TR, that overlapped with a candidate cis-regulatory element (cCRE). (PLS) Promoter-like sequence, (ELS) enhancer-like sequence, (p) TSS proximal, (d) TSS distal. (Right) The proportional breakdown of all cCRE groups. (B) Same as in A, except for mouse ChIP-seq experiments.

This Article

  1. Published in Advance June 12, 2023, doi: 10.1101/gr.277273.122 Genome Res. 33: 763-778

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