Accurate transcriptome-wide identification and quantification of alternative polyadenylation from RNA-seq data with APAIQ

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Figure 2.
Figure 2.

APAIQ predicts PAS comprehensively and accurately. (A) Proportion of the predicted PAS within different distances from the PAS in the ground truth. (B) The proportion of PAS above different expression thresholds that have been identified by APAIQ. (C) Barplot showing the number of the identified PASs that are not overlapped with ground truth divided into four categories. (D) Genome Browser illustrating the predicted PAS and the PAS identified by 3′ end-seq in four cell lines.

This Article

  1. Published in Advance April 28, 2023, doi: 10.1101/gr.277177.122 Genome Res. 33: 644-657

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