Figure 4.
The distribution of LD (r2) between SVs and nearby SNPs in domestic sheep, with different MAF ranges for SVs. (A) Density distribution of LD between SVs and nearby SNPs. (B) Contour density plots of LD between SVs and nearby SNPs. For each SV, the maximum r2 with nearby SNPs (±50 kb) on either side together with their physical distance is recorded. The Mann–Whitney U test was used to determine the difference in SV density between standing SVs and domestication-associated (Dom-associated) SVs. Blue lines: standing SVs that are present in mouflons; red lines: domestication-associated SVs.
