Figure 6.
Detection of candidate TEs contributing to high-altitude adaptation. (A) Genome-wide scans for selective sweeps using iHS, nSL, and X P-EHH. iHS, nSL, XP-EHH values are normalized as Z-scores, which are shown in a Manhattan-inspired plot, with significant SNP Z-scores >2 plotted against genomic positions. (B) Presence frequency differences of 20 candidate adaptive TEs between Tibetan wild boars, Chinese domestic pigs, and European commercial pigs. (C) The Venn plot shows 20 genes with candidate adaptive TEs identified in the three methods.
