Scalable and model-free detection of spatial patterns and colocalization

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Figure 5.
Figure 5.

Application of SpaGene to high-definition spatial transcriptomics (HDST) data from main olfactory bulb (MOB). Visualization of three spatially variable genes. (A) Gene-expression levels from HDST (high in red, low in blue), with adjusted P-values from SpaGene. (B) In situ hybridization results for the three genes obtained from the Allen Brain Atlas.

This Article

  1. Published in Advance September 9, 2022, doi: 10.1101/gr.276851.122 Genome Res. 32: 1736-1745

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