Scalable and model-free detection of spatial patterns and colocalization

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Figure 4.
Figure 4.

Application of SpaGene to Slide-seqV2 of mouse cerebellum data. (A) Visualization of four known spatially variable genes located in specific cerebellum layers (high expression in red, and low in blue), with adjusted P-values from SpaGene. (B) Cell clustering based on transcriptional profiles alone. (C) Enrichment scores of markers in location-restricted cell types by SpaGene and SPARK-X.

This Article

  1. Published in Advance September 9, 2022, doi: 10.1101/gr.276851.122 Genome Res. 32: 1736-1745

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