High temporal resolution RNA-seq time course data reveals widespread synchronous activation between mammalian lncRNAs and neighboring protein-coding genes

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Figure 2.
Figure 2.

Gene-specific degradation rates shape mRNA dynamics. (AG) Pre-mRNA (top panels) and mRNA expression profiles (bottom panels) of seven representative genes with rapid pre-mRNA dynamics. Pre-mRNA and mRNA expression profiles (points) were obtained by quantification of RNA-seq reads mapping to gene introns and exons, respectively. Pre-mRNA expression profiles are overlaid with impulse model fits (lines) to aid visualization. mRNA expression profiles are overlaid with the transcription model fits (lines) used to obtain gene-specific mRNA half-lives, presented in H.

This Article

  1. Genome Res. 32: 1463-1473

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