Epigenomic analysis reveals prevalent contribution of transposable elements to cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish

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Figure 3.
Figure 3.

Heat map of tissue-specific enrichment of TE subfamilies in epigenetic states. (A) Active promoter. (B) Weak promoter. (C) Active enhancer. (D) Proximal ATAC-seq peaks. (E) Distal ATAC-seq peaks. (F) UMRs. (G) LMRs. (LOR) Log odds ratio, (*) FDR < 0.05 from permutation test with Benjamini–Hotchberg multiple testing corrections. (H) Known motifs of TE subfamilies enriched in testis-specific enhancer regions.

This Article

  1. Published in Advance June 1, 2022, doi: 10.1101/gr.276052.121 Genome Res. 32: 1424-1436

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