Figure 3.
Comparison of genotypes called in two Illumina data sets (HiSeq and NextSeq) of banana specimen by Octopus, GATK4, and FreeBayes. UpSet plot shows callset intersections for each caller–data set pair. The largest 50/63 intersection sets are shown. Intersections are color-coded by caller discordance between the two data sets: no discordances (black), Octopus (blue), GATK4 (red), FreeBayes (green), Octopus & GATK4 (purple), Octopus & FreeBayes (cyan), GATK4 & FreeBayes (yellow), and all (brown). The total number of unique genotype calls was 19,197,247.
