Structure, abundance, and phylogenetic distribution of novel TE families. The four newly identified TRIM families are shown; for the remaining 60 novel families see Supplemental Figure S2. (A) The structure of each new family is displayed: the light blue box represents the full extension of the TE, and the red arrows represent LTRs. All insertions for each TE family were identified and are shown as a coverage plot in which each line represents a copy in the genome. The large number of stacked horizontal lines in the extremes of the plot represent an abundance of solo LTRs. (B) Phylogenetic distribution of the TE family insertions in 15 members of the Anopheles genus, including the eight members of the An. gambiae complex, two more distantly related mosquito species (Culex quinquefasciatus and Aedes aegypti), and Drosophila melanogaster. The number of insertions with >80% identity and spanning at least 80% of the consensus in each species is shown using a black and white gradient: species with no insertions are shown in white, and species with 15 or more insertions are shown in black.
