Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes

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Figure 4.
Figure 4.

Phylogenetic tree colored by age-group log of the likelihood ratio of older to younger adults per node. (A) Distribution of Faith's PD by age group on the full data set. (B) Web of Life (WoL) phylogenetic tree with branches colored by the log of likelihood ratio of old adults compared to young adults in descendants of the branch, for the FINRISK data set. The inner circle is colored by the log of likelihood ratio of older adults compared to younger adults in the tips of the tree. The outer circle is colored by the phylum of the taxon represented by each tree tip. Red ellipses mark two clades enriched for samples from older individuals.

This Article

  1. Genome Res. 31: 2131-2137

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