Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

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Figure 9.
Figure 9.

Subclustering of neurons reveals finer structure that distinguishes different types of neurons. (A) Cells with reads in peaks near genes with expression patterns specific to neuron subtypes cluster together (bbs-8: ciliated sensory neurons; gcy-32: oxygen sensory neurons; unc-30: GABA-ergic neurons; mec-7: touch receptor neurons; ceh-24: cholinergic neurons). (B) Cells in the UMAP plot are colored by the number of marker genes with nearby coaccessible peaks. Here, we show marker genes for the ASE neurons, a specific pair of ciliated sensory neurons, which are identified in one of the bbs-8 clusters from A (marked by the left-facing arrow), and show marker genes shared by the oxygen sensory neurons AQR, PQR, and URX, which further support the cluster marked with gcy-32 in A (marked by the right-facing arrow).

This Article

  1. Genome Res. 31: 1952-1969

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