Figure 3.
Alignments of ONT long reads from ddm1 VLP DNA. The central polypurine tract (cPPT), PBS, and PPT positions are indicated as dashed lines relative to full and LTR annotation of SISYPHUS (AT3TE76225), EVADE (AT5TE20395), and ATGP3 (AT1TE45315). Gaps in individual reads are indicated with black horizontal lines, and sequence mismatches are shown as colored dots in the read alignments. Pileups of linear intermediates are observed for EVADE, whereas a continuous distribution of fragment lengths is observed in SISYPHUS.
