netNMF-sc: leveraging gene–gene interactions for imputation and dimensionality reduction in single-cell expression analysis

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Figure 4.
Figure 4.

Identification of mouse brain cell types. (A–E) t-SNE projections of scRNA-seq data from 2022 brain cells from an E18 mouse. Colors indicate cell types as derived in bigSCale analysis of 1.3 million E18 mouse brain cells (Iacono et al. 2018). (F) Proportions of each cell type predicted by each method. Entries highlighted in blue are within 2% of the proportions from bigSCale. Entries highlighted in orange differ by >10% from the proportions from bigSCale.

This Article

  1. Published in Advance January 28, 2020, doi: 10.1101/gr.251603.119 Genome Res. 30: 195-204

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