Ultrafast and scalable variant annotation and prioritization with big functional genomics data

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Figure 3.
Figure 3.

Comparison of VarNote with existing tools for variant-level annotations. (A) The runtime comparisons of variant annotation using multithreading. Three variant call results as query data sets (NA12878_Amp, NA12878_WES, and NA12878_WGS) and three genome-wide annotation databases (dbNSFP, gnomAD, and CADD_anno) were used. (B) The parallelization efficiency comparisons for variant annotation task of NA12878_WGS querying on gnomAD. (C) The parallelization efficiency comparisons for variant annotation task of NA12878_WGS querying on CADD_anno.

This Article

  1. Published in Advance October 15, 2020, doi: 10.1101/gr.267997.120 Genome Res. 30: 1789-1801

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