V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

Figure 2.
Figure 2.

Fusion graph and fusion matrix for 12 D genes with at least 2% usage computed for the ALLERGY data set. (A) Vertices of the fusion graph are arranged clockwise along the circle according to the order in the IGHD locus, from D2-2 to D3-22. Vertices are colored according to the usage of the corresponding D genes: from pale (D2-8, usage 2.0%) to dark (D3-10, usage 15.5%). Each directed edge connects a vertex D with a vertex D*, where D* follows D in the IGHD locus. The width of an edge (D, D*) is proportional to coeff(D, D*). Only edges corresponding to coupled D genes are shown. (B) The matrix on the right shows values of coeff(D, D*) for fusions of the selected twelve commonly used IGHD genes, where genes D and D* correspond to rows and columns, respectively. Cells are colored according to the values of tandem coefficients: from low (dark blue) through medium (pale) to high (dark red).

This Article

  1. Genome Res. 30: 1547-1558

Preprint Server