
Phylogenetic signals and ILS markers. (A) Thirty-two shared TE insertions in bat species support the monophyly of Yinpterochiroptera. A single conflicting insertion merging vampire bats with lesser down bats (dotted line) suggests the occurrence of ILS during the early evolution of bats. (B) Twenty-nine TE insertions in whale species support the monophyly of toothed whales. Nevertheless, two markers supporting the dolphin-baleen whale monophyly (dotted line) may indicate ancestral ILS or hybridization during the early evolution of whales.











