BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

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Figure 4.
Figure 4.

biosyntheticSPAdes assembly of the hectochlorin BGCs (the CYANO data set). (Top) The subgraph of the assembly graph corresponding to the hectochlorin BGC. metaSPAdes assembly results in four scaffolds shown by a red path, a green path, and two black edges. The repeat edges traversed by both red and green scaffolds are shown by the brown color. The domain restoration procedure had no effect on this graph. (Bottom) The scaffolding graph of the hectochlorin BGC has only one rural postman route that revealed the correct domain order.

This Article

  1. Genome Res. 29: 1352-1362

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