High-throughput functional analysis of lncRNA core promoters elucidates rules governing tissue specificity

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

Figure 5.
Figure 5.

In this model, overlapping TF motifs are associated with high expression and low specificity. Schematic showing biotypes that are highly and ubiquitously expressed (left; thick arrow) have more overlapping TF binding sites (gray shaded boxes) and thus more TFs can bind both within a specific cell type or across cell types. Biotypes that are lowly and specifically expressed (right; thin arrow or crossed arrow) have fewer overlapping motifs and thus only a few TFs (one in the example) can bind. TFA is present in cell types 1 and 2, whereas TFB and TFC are only present in cell type 1 and cell type 2, respectively.

This Article

  1. Genome Res. 29: 344-355

Preprint Server