Figure 5.
Known pseudo-SDs formed by common repeats and reverse palindromes in the hg19 assembly of the human genome. (A) A known SD starting at position 64,382,311 on Chromosome 18 (length 6343 bp) and at position 91,148,760 on Chromosome 4 (length 6353 bp) contains only ∼300 bp of unique genomic sequence (shown in black). This SD contains an L1PA3 repeat (shown in blue) from the L1 repeat family of length ∼6000 bp. (B) A known SD starting at position 221,647,372 on Chromosome 1 (length 2061 bp) represents a reverse palindrome.
