An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

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Figure 3.
Figure 3.

Comparison between IWGSC annotation and TGACv1 high (HC) and low confidence (LC) genes. IWGSC genes were aligned to the TGACv1 assembly (gmap, ≥90% coverage, ≥95% identity) and classified based on overlap with TGACv1 genes. (A) Identical indicates shared exon–intron structure; contained, exactly contained within the TGACv1 gene; structurally different, alternative exon–intron structure; and missing, no overlap with IWGSC. (B) Bar plot showing proportion of HC TGACv1 protein-coding genes supported by protein similarity or PacBio data. Genes are classified based on overlap with the full set of IWGSC genes.

This Article

  1. Published in Advance April 18, 2017, doi: 10.1101/gr.217117.116 Genome Res. 27: 885-896

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