Figure 5.
Pipeline for (A) generating and (B) filtering de novo contigs. Shown is an overview of the protocol for selecting reads, making de novo contigs, and filtering them in preparation for haplotype assembly. Yellow boxes denote data, red boxes denote existing computer programs that were used (these are named at the left), and blue boxes denote in-house scripts. Gray hexagons are used to show data that are not used further in the pipeline.
