Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

Figure 3.
Figure 3.

Assembly scaffolding using chromosome conformation capture data. (A) Improved chromosome conformation capture data scaffolding workflow. (B) Misassembly identification using chromosome conformation capture read pairs. The paired-end mapping positions in the region 300–500 kb of FALCON contig 000171F show a sudden absence of read pairs spanning across the region at around 410 kb. A misassembly at this region was indicated by HiRise. (MQ) Mapping quality.

This Article

  1. Published in Advance February 3, 2017, doi: 10.1101/gr.213652.116 Genome Res. 27: 778-786

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research