Figure 4.
Contigs from the 89 scaffolds >3.2 Mbp that compose 90% of the genome are aligned to GRCh38 using BWA-MEM. Contigs from the same scaffold are shown in the same shade of gray, and alternating shades of light and dark gray are used to distinguish between contigs from different scaffolds. Two translocations, t(1;16) and t(6;8), are shown in green and blue. The segments of the genome that are not covered by alignments of the largest 89 scaffolds are shown offset in black. Gaps in the reference genome, including centromeres and other heterochromatin, are shown in red.
